Tools
We aim to share our outputs with the scientific community and have developed a range of open source tools.
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Description |
Group |
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Online tool to design oligonucleotides for multiple targets for use in next generation (NG) Capture-C experiments. Reference |
Hughes, Taylor |
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Computational Genomics Analysis Toolkit
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Sims |
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The Human Erythroblast Maturation database (HEM) contains differentially regulated and continuously expressed transcripts: a resource for future functional studies of erythropoiesis. |
Taylor |
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The Multi-Image Genome viewer (MIG) is primarily aimed at high-throughput sequencing experiments where a "signal" is detected at multiple locations across the genome (such as ChIP-Seq and RNA-Seq). MIG allows the user to filter, sort and visualise these regions of interest in their local genome context. Reference |
Taylor | |
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The miR-CRISPR tool is an integrated algorithm designed to facilitate CRISPR / Cas9 genome engineering of putative microRNA response elements (MREs). Reference |
Taylor |
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Ruffus A pipelining tool for Python |
Sims | |
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Predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints. Reference |
Hughes |
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UMI-tools Deduplication using molecular barcodes |
Sims |
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Comparison of reference and mutant DNA: identifies restriction enzymes that cut the two sequences in a discriminative manner |
Taylor |
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Zegami lets you search, sort, filter and group collections of images in real time and in a single field of view. It allows you to load not only your images, but also the associated metadata and has an array of in-built filters that make it easy to see patterns and identify relationships based on the data contained in each image. |
Taylor |
