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Publications

Recent publications published by researchers at the MRC WIMM.

Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs.

Weeratunga P. et al, (2023), Nat Commun, 14

Breathlessness in a virtual world: An experimental paradigm testing how discrepancy between VR visual gradients and pedal resistance during stationary cycling affects breathlessness perception.

Finnegan SL. et al, (2023), PLoS One, 18

LanceOtron: a deep learning peak caller for genome sequencing experiments.

Hentges LD. et al, (2022), Bioinformatics

Multi Locus View: an extensible web-based tool for the analysis of genomic data.

Sergeant MJ. et al, (2021), Commun Biol, 4

High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale.

Downes DJ. et al, (2021), Nat Commun, 12

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium None. et al, (2021)

LanceOtron: a deep learning peak caller for ATAC-seq, ChIP-seq, and DNase-seq

Hentges L. et al, (2021)

Multi Locus View : An Extensible Web Based Tool for the Analysis of Genomic Data

Sergeant MJ. et al, (2020)

Targeted high-resolution chromosome conformation capture at genome-wide scale

Downes DJ. et al, (2020)

Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame.

Chattaway MA. et al, (2019), Microb Genom, 5

GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.

Zhou Z. et al, (2018), Genome Res, 28, 1395 - 1404

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.

Zhou Z. et al, (2018), Curr Biol, 28, 2420 - 2428.e10

A genomic overview of the population structure of Salmonella.

Alikhan N-F. et al, (2018), PLoS Genet, 14

Impact of human-associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131.

Mora A. et al, (2018), Sci Rep, 8

The gut-adherent microbiota of PSC-IBD is distinct to that of IBD.

Quraishi MN. et al, (2017), Gut, 66, 386 - 388

Promotion of Germination Using Hydroxamic Acid Inhibitors of 9-cis-Epoxycarotenoid Dioxygenase.

Awan SZ. et al, (2017), Front Plant Sci, 8

Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca.

Duggett NA. et al, (2016), Genome Announc, 4

Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.

Kay GL. et al, (2015), Nat Commun, 6

Resequencing at ≥40-Fold Depth of the Parental Genomes of a Solanum lycopersicum × S. pimpinellifolium Recombinant Inbred Line Population and Characterization of Frame-Shift InDels That Are Highly Likely to Perturb Protein Function.

Kevei Z. et al, (2015), G3 (Bethesda), 5, 971 - 981

Differences in the Faecal Microbiome in Schistosoma haematobium Infected Children vs. Uninfected Children.

Kay GL. et al, (2015), PLoS Negl Trop Dis, 9

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