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Publications

Recent publications published by researchers at the MRC WIMM.

Panpipes: a pipeline for multiomic single-cell and spatial transcriptomic data analysis.

Curion F. et al, (2024), Genome Biol, 25

Author Correction: Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture.

Downes DJ. et al, (2023), Nat Protoc

Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture.

Downes DJ. et al, (2022), Nat Protoc, 17, 445 - 475

IL-1-driven stromal-neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies.

Friedrich M. et al, (2021), Nat Med, 27, 1970 - 1981

RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course.

McLoughlin KE. et al, (2021), Front Vet Sci, 8

Whole-genome sequencing of a sporadic primary immunodeficiency cohort.

Thaventhiran JED. et al, (2020), Nature, 583, 90 - 95

Orchestrating single-cell analysis with Bioconductor.

Amezquita RA. et al, (2020), Nat Methods, 17, 137 - 145

Publisher Correction: Orchestrating single-cell analysis with Bioconductor.

Amezquita RA. et al, (2020), Nat Methods, 17

TreeSummarizedExperiment: a S4 class for data with hierarchical structure.

Huang R. et al, (2020), F1000Res, 9

Bi-allelic Loss-of-Function CACNA1B Mutations in Progressive Epilepsy-Dyskinesia.

Gorman KM. et al, (2019), Am J Hum Genet, 104, 948 - 956

Orchestrating Single-Cell Analysis with Bioconductor

Amezquita R. et al, (2019)

The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages.

Schulthess J. et al, (2019), Immunity, 50, 432 - 445.e7

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis.

O'Doherty AM. et al, (2019), Sci Rep, 9

Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets.

Aulicino A. et al, (2018), Nat Commun, 9

Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.

Farmery JHR. et al, (2018), Sci Rep, 8

Comprehensive Cancer-Predisposition Gene Testing in an Adult Multiple Primary Tumor Series Shows a Broad Range of Deleterious Variants and Atypical Tumor Phenotypes.

Whitworth J. et al, (2018), Am J Hum Genet, 103, 3 - 18

De Novo Truncating Mutations in WASF1 Cause Intellectual Disability with Seizures.

Ito Y. et al, (2018), Am J Hum Genet, 103, 144 - 153

RNA sequencing (RNA-seq) reveals extremely low levels of reticulocyte-derived globin gene transcripts in peripheral blood from horses (Equus caballus) and cattle (Bos taurus)

Correia C. et al, (2018)

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli.

Malone KM. et al, (2018), Microb Genom, 4

Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data.

Farmery JHR. et al, (2018), Sci Rep, 8

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