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Publications

Recent publications published by researchers at the MRC WIMM.

Goblet cell differentiation subgroups in colorectal cancer.

Abdullayeva G. et al, (2024), Proc Natl Acad Sci U S A, 121

Mechanisms and management of loss of response to anti-TNF therapy for patients with Crohn's disease: 3-year data from the prospective, multicentre PANTS cohort study.

Chanchlani N. et al, (2024), Lancet Gastroenterol Hepatol, 9, 521 - 538

Tracking in situ checkpoint inhibitor-bound target T cells in patients with checkpoint-induced colitis.

Gupta T. et al, (2024), Cancer Cell, 42, 797 - 814.e15

GSDMB is increased in IBD and regulates epithelial restitution/repair independent of pyroptosis.

Rana N. et al, (2024), Cell, 187, 1011 - 1015

A robust deep learning workflow to predict CD8 + T-cell epitopes.

Lee CH. et al, (2023), Genome Med, 15

Intelectin-1 binds and alters the localization of the mucus barrier-modifying bacterium Akkermansia muciniphila.

Matute JD. et al, (2023), J Exp Med, 220

A robust deep learning platform to predict CD8+ T-cell epitopes

Lee CH. et al, (2022)

Pathogenesis of fistulating Crohn's disease: a review.

Chantelle McGregor CG. et al, (2022), Cell Mol Gastroenterol Hepatol

Lymphatic endothelia stakeout cryptic stem cells.

Antanaviciute A. et al, (2022), Cell Stem Cell, 29, 1292 - 1293

Large-scale sequencing identifies multiple genes and rare variants associated with Crohn's disease susceptibility.

Sazonovs A. et al, (2022), Nat Genet

Author Correction: Somatic mosaicism and common genetic variation contribute to the risk of very-early-onset inflammatory bowel disease.

Serra EG. et al, (2022), Nat Commun, 13

Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens.

Buckley PR. et al, (2022), Brief Bioinform

HLA-dependent variation in SARS-CoV-2 CD8+ T cell cross-reactivity with human coronaviruses.

Buckley PR. et al, (2022), Immunology

Dual RNA sequencing reveals dendritic cell reprogramming in response to typhoidal Salmonella invasion.

Aulicino A. et al, (2022), Commun Biol, 5

GSDMB is increased in IBD and regulates epithelial restitution/repair independent of pyroptosis.

Rana N. et al, (2022), Cell, 185, 283 - 298.e17

Isolation of human fetal intestinal cells for single-cell RNA sequencing.

Fawkner-Corbett D. et al, (2021), STAR Protoc, 2

Interferon-Gamma-Producing CD8+ Tissue Resident Memory T Cells Are a Targetable Hallmark of Immune Checkpoint Inhibitor-Colitis.

Sasson SC. et al, (2021), Gastroenterology, 161, 1229 - 1244.e9

A Pilot Study on Automatic Three-Dimensional Quantification of Barrett's Esophagus for Risk Stratification and Therapy Monitoring.

Ali S. et al, (2021), Gastroenterology, 161, 865 - 878.e8

HLA-dependent variation in SARS-CoV-2 CD8+ T cell cross-reactivity with human coronaviruses

Buckley PR. et al, (2021)

A sub-national real-time epidemiological and vaccination database for the COVID-19 pandemic in Canada.

Berry I. et al, (2021), Sci Data, 8

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