Recent publications published by researchers at the MRC WIMM.
Towards the genomic sequence code of DNA fragility for machine learning.
Journal article
Pflughaupt P. et al, (2024), Nucleic Acids Res
Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning.
Journal article
Masuda K. et al, (2024), Sci Data, 11
Generalised interrelations among mutation rates drive the genomic compliance of Chargaff's second parity rule.
Journal article
Pflughaupt P. and Sahakyan AB., (2023), Nucleic Acids Res
ROptimus: a parallel general-purpose adaptive optimisation engine.
Journal article
Johnson NAG. et al, (2023), Bioinformatics
Quantum mechanical electronic and geometric parameters for DNA k-mers as features for machine learning
Preprint
Masuda K. et al, (2023)
Generalised interrelations among mutation rates drive the genomic compliance of Chargaff’s second parity rule
Preprint
Pflughaupt P. and Sahakyan AB., (2022)
Structure-driven effects on genomic DNA damage propensity at G-quadruplex sites
Preprint
Abdullah AA. et al, (2021)
Thermal and pH stabilities of i-DNA: confronting in vitro experiments with models and in-cell NMR data.
Journal article
Cheng M. et al, (2021), Angew Chem Int Ed Engl
A Spontaneous Ring-Opening Reaction Leads to a Repair-Resistant Thymine Oxidation Product in Genomic DNA.
Journal article
Sahakyan AB. et al, (2020), Chembiochem, 21, 320 - 323
Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Journal article
Marsico G. et al, (2019), Nucleic Acids Res, 47, 3862 - 3874
Structural analysis reveals the formation and role of RNA G-quadruplex structures in human mature microRNAs.
Journal article
Chan KL. et al, (2018), Chem Commun (Camb), 54, 10878 - 10881
Machine learning model for sequence-driven DNA G-quadruplex formation.
Journal article
Sahakyan AB. et al, (2017), Sci Rep, 7
G-quadruplex structures within the 3' UTR of LINE-1 elements stimulate retrotransposition.
Journal article
Sahakyan AB. et al, (2017), Nat Struct Mol Biol, 24, 243 - 247
Single genome retrieval of context-dependent variability in mutation rates for human germline.
Journal article
Sahakyan AB. and Balasubramanian S., (2017), BMC Genomics, 18
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome.
Journal article
Kwok CK. et al, (2016), Nat Methods, 13, 841 - 844
Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA.
Journal article
Kwok CK. et al, (2016), Angew Chem Int Ed Engl, 55, 8958 - 8961
Long genes and genes with multiple splice variants are enriched in pathways linked to cancer and other multigenic diseases.
Journal article
Sahakyan AB. and Balasubramanian S., (2016), BMC Genomics, 17
Core variability in substitution rates and the basal sequence characteristics of the human genome
Journal article
Sahakyan A. and Balasubramanian S., (2015)
Selective Chemical Labeling of Natural T Modifications in DNA.
Journal article
Hardisty RE. et al, (2015), J Am Chem Soc, 137, 9270 - 9272