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Using BaseMount it is possible to mount your BaseSpace account on the CCB file system. You can find full details how to do this at the BaseSpace HelpCenter.

The BaseMount application is installed on the CCB servers so watch the tutorial videos from Step 3. First Time Launch and onwards or go straight to Mounting Your BaseSpace Account on the same page.

Once mounted, you can copy the files you want to the directory of your choice. Since you only have 1TB space in BaseSpace available, it is recommended you do this after each run to free up space otherwise you may be charged for excessive BaseSpace usage.