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Hematopoiesis provides an accessible system for studying the principles underlying cell-fate decisions in stem cells. Proposed models of hematopoiesis suggest that quantitative changes in lineage-specific transcription factors (LS-TFs) underlie cell-fate decisions. However, evidence for such models is lacking as TF levels are typically measured via RNA expression rather than by analyzing temporal changes in protein abundance. Here, we used single-cell mass cytometry and absolute quantification by mass spectrometry to capture the temporal dynamics of TF protein expression in individual cells during human erythropoiesis. We found that LS-TFs from alternate lineages are co-expressed, as proteins, in individual early progenitor cells and quantitative changes of LS-TFs occur gradually rather than abruptly to direct cell-fate decisions. Importantly, upregulation of a megakaryocytic TF in early progenitors is sufficient to deviate cells from an erythroid to a megakaryocyte trajectory, showing that quantitative changes in protein abundance of LS-TFs in progenitors can determine alternate cell fates.

Original publication




Journal article


Cell Stem Cell

Publication Date





812 - 820.e5


CyTOF, FLI1, KLF1, cell fate, erythropoiesis, hematopoiesis, mass cytometry, proteomics, single cell, transcription, Antigens, CD34, Cell Differentiation, Cell Lineage, Cells, Cultured, Erythropoiesis, Gene Expression Regulation, Hematopoiesis, Hematopoietic Stem Cells, Humans, Mass Spectrometry, Proteomics, Single-Cell Analysis, Transcription Factors, Transcriptional Activation, Umbilical Cord