Early immune processes in idiopathic pulmonary fibrosis (IPF) are poorly defined. Here, we integrate single-cell transcriptomics of lung digests and bronchoalveolar-lavaged cells (n = 108 patients), subcellular-resolution tissue spatial transcriptomics, and single-cell phospho-CyTOF of blood cells to define myeloid states associated with early stages of fibrosis. Two distinct myeloid gene transcriptional programs are increased in IPF compared to non-diseased controls-type I interferon-activated and fibrotic remodeling programs. At cell, organ, and patient levels, cell types with increased type I interferon-activated program (FABP4hi alveolar macrophages, classical monocytes, interstitial macrophages, and/or non-classical monocytes) are associated with architecturally better-preserved lung tissue, the alveolar barrier, and less fibrotic lung, or less severe disease. Circulating monocytes exhibit heightened type I interferon response that inversely correlate with severity of clinical disease. Our findings show that myeloid cells with increased type I interferon-activated gene programs are associated with less fibrotic stages of IPF.
Journal article
2026-08-20T00:00:00+00:00
45
CP: immunology, alveolar macrophages, early fibrosis, fibrotic remodeling, idiopathic pulmonary fibrosis, macrophages, monocytes, myeloid cell states, single cell RNA sequencing, spatial transcriptomics, type I interferon